Day 9 Biochemical and Metabolic pathway analysis Demo on tools: KEGG

Recorded Sessions

Day 1 : Ice-breaking Session on Bioinformatics Global Tools and Techniques (67:44)
Day 2 : Scope & Opportunities in Bioinformatics: India & Abroad (57:36)
Day 3: Understanding Key Terminology in Bioinformatics Databases (62:13)
Day 4 : Carbohydrates and Proteins Demo on tools: Cheminformatics (65:26)
Day 5 : Lipids and Nucleic acids Demo on tools: ChemDraw & ChemSketch (67:35)
Day 6: Primary Sequences – DNA, RNA, and Proteins Demo on tools: NCBI, EMBL, DDBJ, and SBI (62:30)
Day 7 Secondary Structures – DNA, RNA, and Proteins Demo on tools: GORV, Swiss model, I-TASSER, Phyre2 (45:26)
Day 8 Tertiary Structures – Stability, folding, and misfolding Demo on tools: Protein Data Bank (PDB), EMBL and SBI (62:08)
Day 9 Biochemical and Metabolic pathway analysis Demo on tools: KEGG database and Cytoscape (62:34)
Day 10 Introduction, Drug discovery pipeline: Target identification and validation, Lead identification and optimization, Virtual screening Demo: IMPPAT and Dr. Duke's Phytochemical and Ethnobotanical databases for Phytochemistry Research. (61:20)
Day 11 ADMET Studies for the lead optimization. Demo on tools: SWISS-ADME, Analysis, and Interpretation; Boiled-Egg Model (57:02)
Day 12 Introduction to protein and modelling concepts, types, homology modelling, and the ab-initio method. Demo on tools: PDB tools, Swiss ExPaSy (53:59)
Day 13 Constructing a Phylogenetic Tree- Demo on tools: ClustalW, Clustal Omega (57:42)
Day 14 QSAR Studies and Interpretation of Docking Demo on Molecular docking software: Patchdock, Autodock, ClusPro web server (59:22)
DAY 15 Introduction to Molecular Dynamics and Simulation (MDS). (60:05)
DAY 16 Pre-clinical (Bacterial, Fly, Plants, and Murine models), Human Clinical Trials for drug discovery, Functional genomics, and Comparative genomics. Demo on the tool: Differential expression analysis on bacterial genome. (60:36)
DAY 17 Protein-protein interaction network, STRING, Network terminology, Pathway enrichment analysis Demo on the tool: STRING and Cytoscape. (60:05)
DAY 18 Human Genome project, Bacterial Genomics, Human Microbiome, and Epigenetics Demo on database: Ensembl Bacteria, MicrobiomeDB (65:08)
DAY 19 Sanger sequencing, Next Generation Sequencing: DNA Sequencing, RNA Sequencing. miRNA Analysis. Demo on the tool: Databases: dbSNP, Clinvar, Genome browsers: UCSC and Ensembl (60:30)
DAY 20 Publication types, formats, and journals Demo on the tool: Elsevier, Springer, Wiley, MDPI, and Bentham Sciences (48:59)
DAY 21 Research made easy with Artificial Intelligence (AI & ML) Demo on the tool: Applications of ChatGPT in BioResearch (58:41)
DAY 22 Selection of the journal and indexing Demo on the tool: Journal finder (60:16)
DAY 23 Submission, Revision, and re-submission process Demo on tool: Editorial Manager (57:30)
DAY 24 Structure and ingredients of proposal writing (58:06)
DAY 25 Networking and funding from (govt./ private/ industrial partners) (66:18)
DAY 26 Portals for grant submission and prerequisites (53:26)
DAY 27 Generating primary data for proposal and funding (58:09)
DAY 28 Generating ideas, Start-ups, and Bioenterpreunship (55:46)
DAY 29 Live troubleshooting session (57:35)
DAY 30 Open Discussion (62:10)
19th April 2024 induction for 3 and 6 month project (45:13)
22th April 2024 (58:14)
23rd April 2024 (76:33)
24th April 2024 (56:16)
25th April 2024 (43:22)
26th April 2024 (37:08)
29th April 2024 (53:19)
30th April 2024 (37:24)

Day 9 Biochemical and Metabolic pathway analysis Demo on tools: KEGG database and Cytoscape